Resources for during and after the Clinic

• Learning terminology
  • DAIDD Glossary
  • Modelling concepts
  • Notation notes from DAIDD 2020
  • Research Questions - PICO
• Learning R
  • ICI3D tutorials
  • Repository template for student modelling projects
  • R Studio Cheat Sheets
  • R for Data Science
  • R Studio Data Wrangling Cheat Sheet
  • R Bootcamp - specifically for learning tidyverse
  • Project Mosaic
• Further reading
  • An introduction to infectious disease modelling by E Vynnycky and RG White - link
  • Modeling Infectious Diseases in Humans and Animals by MJ Keeling and P Rohani - review, link
  • Epidemics: models and data using R by O Bjornstad - preview, package, link
• More fun things
  • xkcd (comic)
  • The 100% CI (blog)
  • Statistical Modeling, Causal Inference, and Social Science (blog)
• Models used during the week
  • Code for the model underlying the Dynamical Fever exercise.
  • Tuesday morning spreadsheet tutorials
    • SIR model
    • SIRS model
    • SIRS plus
  • Example code for simple stochastic models:
    • Code for comparing ODE, difference equation (discrete time), and Gillespie approaches to modelling a simple model with a single process (death).
    • Code for Becky’s stochastic introductions model of rabies spillover.
    • Also see the ICI3D R tutorials (linked above) for additional examples of stochastic simulation models, including the Gillespie algorithm and chain binomial models.